Hello all! First off I'm using the haxelib version. I can create and compile projects for my targets, but I can't for the life of me figure out how to make the 'core' flashdevelop project file. I'm using the empty project generated by the haxelib version. Thanks.

To answer my own question, you don't have to I misunderstood how the project structure works. My source files are under the references instead of in a folder like how other haxe frameworks projects look in flashdevelop.

Ya, FlashDevelop does that automatically when the sources are not in a subdirectory of the directory the project file is in I think.